Incorporation of gene location in SSR file

The purpose of this tool is to incorporate the gene locations in SSRs (simple sequence repeats) file. Interface of IGLSF tool is shown in Fig 1.

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Fig 1. Interface of incorporation of gene location in SSR file

IGLSF tool requires two inputs as seen from the Fig 1. These are:

1. Gene File and

2. SSRs File where gene locations will be incorporate.

Both the inputs must be in (.xlsx) format and can be uploaded by clicking on “Upload Gene File” and “Upload SSR File” buttons. A status message will be display just right in the box after successful uploading of Gene File and SSR file as shown in the Fig 2.

Fig 2. File status

Fig 2. Uploading status

Once the files are uploaded successfully, the output can be obtained by clicking on Simulate button and can be seen from the Fig 3. The output file is the same SSRs file with appended column (SSR location in Gene) rather than a new output file in (.xlsx) format.

Fig 3. Output in (.xlsx) format

Fig 3. Output in (.xlsx) format

Both the inputs files must be in the same format as described below:

1. Format for Gene File: The Gene file must be in (.xlsx) format and must contain these data as shown in Fig 4.

Fig 4. Format of Gene data

Fig 4. Format of Gene file

2. Format for SSR file: The SSR file must be in (.xlsx) format and must contain these data as shown in Fig 5.

input2

Fig 5. Format of SSR file

Click the link below to download the tool

incorporation of gene location in ssr file (230 downloads)

To know the necessary requirements to run this tool please visit

http://www.pirotechnologies.com/bioinformatics-tools

If you have any suggestion or feedback for us, please write us on [email protected] or contact us through

http://www.pirotechnologies.com/contact-2